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Scaling High-Quality Data Processing: How to Achieve 4x Cost Reduction for Foundation Models

January 28, 2025
11 AM PST / 2 PM EST

Life sciences R&D teams face significant challenges with big data, particularly when training deep learning or Foundation Models in biology. Popular single-cell biology models like scGPT and Geneformer require millions of high-quality data points, but the associated computational demands make building scalable, cost-effective infrastructure critical. IT teams must address robust computational power, efficient pipelines, and cost optimization to succeed.

To tackle these challenges, organizations need infrastructure designed to process and annotate data consistently at scale. While platforms like AWS are popular, they often require extensive customization and incur high costs for biology-specific workflows.

In this webinar, we’ll discuss how Elucidata’s domain-specific cloud platform, Polly, outperforms leading solutions like AWS in building and training scRNA-seq-specific Foundation Models.

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Real-World Applications We’ll Cover

  • Scaling clinico-genomic data integration: Large pharmaceutical organizations working with external data providers used Polly to build interoperable clinico-genomic data products 6x faster.
    Although purchased datasets are often labeled as "clean," they still lack interoperability—Polly's pipelines bridge this gap with robust integration and harmonization.

  • Information Retrieval: Drug safety monitoring teams used Polly's Knowledge Graph powered co-scientist to conversationally retrieve the right cohorts & assess drug response—cutting discovery time by 70%.

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What You’ll Learn

  • How Polly’s combination of a bare-metal tech stack and cloud expertise delivers 4x lower costs and 2.5x faster speeds for processing 33 million single cells.
  • The importance of tailoring infrastructure to meet the unique demands of bioinformatics pipelines.
  • Why optimizing human workflows is as critical as optimizing infrastructure to enable efficient, large-scale data processing. The goal is to process as many samples as possible, with limited human oversight and intervention.
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Meet the Experts of this discussion
Harshveer Singh
Director of Engineering
Jainik Dedhia
Senior Product Manager
Shruti Malavade
Manager - Product Marketing
Key Takeaways
How data providers ensure adherence to quality standards through validation and compliance.
How GUI-based workflows, CLI tools, and collaborative workspaces enable streamlined data ingestion and synchronization at scale.
Understand how automated pipelines assess conformance, plausibility, and consistency, ensuring high-quality, AI-ready data products.
Key Takeaways
Reduce operational costs by streamlining data delivery through reusable, governed products.
Accelerate diagnostic development and clinical trial execution by delivering compliant, high-quality data at scale.
Improve audit readiness and regulatory confidence through governed data products and built-in quality assurance.
Equip cross-functional teams to act on trusted data—faster, and with greater confidence.
Who Should Attend?
Computational Biologists and Bioinformaticians
Life Sciences R&D Leaders
IT and Infrastructure Teams in Biopharma
AI & Machine Learning Practitioners in Life Sciences

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